Sunday 23 December 2012

Purifying Organic Compounds


Purifying organic compounds in lab can be very challenging sometimes.  If you planning to use column purification you may end using lot of solvents and also your time.  Instead you can try some recrystallisation techniques for some large scale purifications.  These can also work for small scale but be wise in judging whether you want try RC’s for milligrams scale as sometimes column purification is best for milligrams and grams scale purification if you want to save time finding out right techniques unless you are developing a process though.

Below mentioned are some of the techniques which I do.  I just mentioned the rough idea and not a very detailed procedure here.

Idea 1: Try to dissolve your compound in acetone.  If it doesn't dissolve in acetone at rt then try to heat gently to make it dissolve.  Then bring the solution to rt and try to add water slowly (your compound should be water insoluble) and see whether your compounds precipitates out pure or not.

Try repeating this other water soluble solvents like Methanol, ethanol, IPA..etc

Idea 2: This is hot slurry techniques.  Make a stirrable slurry of your compound in solvents like ethyl acetate, MTBE, DCM (low boiling so be careful while heating)…etc..Stir the slurry under hot conditions and bring down the temperature to rt and filter.  You can try different temperatures for this slurry.  My idea is to try with the high temperature first and go to low temperature.

Hot filtration can also be done but I do not recommend it for large scale purifications and its risky.  For grams scale you can try hot filtration.

Idea 3:  dissolve your compound in more polar solvent like ethyl acetate or DCM and try to precipitate it with by adding a non-polar solvent like hexanes or heptanes an check for any precipitation.  See again its all about different combinations but a meaning full combination..:)  You can reverse this technique this way also.

Dissolve your compound in minimum amount of polar solvent and add this to your non-polar solvent slowly under stirring.  And check for precipitations.   This might work in some cases where the other mode of addition hasn’t worked.

Idea 4:  This is exactly a recrystallisation.  Dissolve your compound in a more polar solvent but in minimum volume under heating.  Basically what you do is take your compound and put in some polar solvent say like 5 or 8 volumes roughly.  Then start heating it until it dissolves or sometimes you need reflux for it to dissolve.  Once you get a solution of your compound, cool the solution to rt (or cool sometimes if you don’t see any ppt) and check for precipitation and filter if you get enough time precipitated.
 
Finally any of these techniques may or may not work for you.. Its all about trial and error.  Some times you end up getting oily product.  Don't worry repeat the same technique with few crystals of pure compound and see if it does any good.  Final word of suggestion be careful with hot RC.

Saturday 5 May 2012

NMR Residual Solvent Peaks

Below is the link for residual solvent peaks in 1H NMR and 13C NMR.  I have got this link from Rochester university website.  Thanks to Department of Chemistry, Bar-Ilan University (Israel) for collecting all this data.


Click here to download the pdf copy.

Wednesday 25 April 2012

Organic Solvent Properties

Below is the list of solvents along with density, melting point, boiling point, Formula weight.  I have also inlcuded CAS no so that it will be helpful to you during your work.  Please bring to my notice if there is any mistake in this list.:)

Solvent
CAS No
FW
MP
BP
Density
Acetone
67-64-1
58.08
-94
56
0.791
Acetonitrile
75-05-8
41.05
-48
82
0.786
Benzene
71-43-2
78.11
5
80
0.874
Benzonitrile
100-47-0
103.12
-13
188
1.010
1-Butanol
71-36-3
74.12
-90
117.7
0.810
2-Butanone
78-93-3
72.11
-87
80
0.805
Butyl acetate
123-86-4
116.16
-78
124-126
0.882
tert-Butyl methyl ether
1634-04-4
88.15
--
53-56
0.74
Carbon disulfide
75-15-0
76.14
-112
46
1.266
Carbon tetrachloride
56-23-5
153.82
-23
77
1.594
Chlorobenzene
108-90-7
112.56
-45
132
1.107
1-Chlorobutane
109-69-3
92.57
-123
77-78
0.886
Chloroform
67-66-3
119.38
-63
60.5-61.5
1.492
Cyclohexane
110-82-7
84.16
6.5
80.7-81
0.779
Cyclopentane
287-92-3
70.14
-94
50
0.751
1,2-Dichlorobenzene
95-50-1
147
-18 to -15
179-180
1.306
1,2-Dichloroethane
107-06-2
98.96
-35
83
1.256
Dichloromethane
75-09-2
84.93
-97
39.8-40
1.325
N,N-Dimethylacetamide
127-19-5
87.12
-20
164.5-166
0.937
N,N-Dimethylformamide
68-12-2
73.10
-61
153
0.944
1,4-Dioxane
123-91-1
88.11
11.8
100-102
1.034
Ether
60-29-7
74.12
-116
34.6
0.708
2-Ethoxyethyl ether
112-36-7
162.23
--
180-190
0.909
Ethyl acetate
141-78-6
88.11
-84
76.5-77.5
0.902
Ethyl alcohol
64-17-5
46.07
-130
78
0.785
Ethylene glycol dimethyl ether
110-71-4
90.12
-58
85
0.867
Heptane
142-82-5
100.21
-91
98
0.684
Hexane
110-54-3
86.18
-95
69
0.659
Hexanes
73513-42-5
86.18
--
68-69
0.67
2-Methoxyethanol
109-86-4
76.1
-85
124-125
0.965
2-Methoxyethyl acetate
110-49-6
118.13
-65
145
1.009
Methyl alcohol
67-56-1
32.04
-98
64.6
0.791
2-Methylbutane
78-78-4
72.15
--
30
0.62
4-Methyl-2-pentanone
108-10-1
100.16
-80
117-118
0.8
2-Methyl-1-propanol
78-83-1
74.12
-108
108
0.803
2-Methyl-2-propanol
75-65-0
74.12
25
83
0.786
1-Methyl-2-pyrrolidinone
872-50-4
99.13
-24
81-82 (3)
1.033
Methyl sulfoxide
67-68-5
78.13
18.4
189
1.101
Nitromethane
75-52-5
61.04
-29
100.8-101
1.127
1-Octanol
111-87-5
130.23
-15
196
0.827
Pentane
109-66-0
72.15
-130
35-36
0.626
3-Pentanone
96-22-0
86.13
-40
102
0.853
1-Propanol
71-23-8
60.1
-127
97
0.804
2-Propanol
67-63-0
60.1
-89.5
82.4
0.785
Pyridine
110-86-1
79.1
-42
115
0.978
Tetrachloroethylene
127-18-4
165.83
-22
121
1.623
Tetrahyrdofuran
109-99-9
72.11
-108
67
0.886
Toluene
108-88-3
92.14
-93
111
0.867
1,1,2-Trichlorotrifluoroethane
76-13-1
187.38
-35
47-48
1.575
2,2,4-Trimethylpentane
540-84-1
114.23
-107
98-99
0.692
Water
7732-18-5
18.02
0
100
1
o-Xylene
95-47-6
106.17
-25 to -23
143-145
0.870
p-Xylene
106-42-3
106.17
12-13
138
0.866